It happens this problem when i run reduced databases:
I0424 23:10:28.811640 47652452934528 utils.py:36] Started HHblits query
I0424 23:10:29.603082 47652452934528 utils.py:40] Finished HHblits query in 0.791 seconds
Traceback (most recent call last):
File "/public/home/AF-soft/alphafold-2.3.1/run_alphafold.py", line 432, in
app.run(main)
File "/public/home/.conda/envs/alphafold/lib/python3.8/site-packages/absl/app.py", line 312, in run
_run_main(main, args)
File "/public/home/.conda/envs/alphafold/lib/python3.8/site-packages/absl/app.py", line 258, in _run_main
sys.exit(main(argv))
File "/public/home/AF-soft/alphafold-2.3.1/run_alphafold.py", line 408, in main
predict_structure(
File "/public/home/AF-soft/alphafold-2.3.1/run_alphafold.py", line 172, in predict_structure
feature_dict = data_pipeline.process(
File "/public/home/AF-soft/alphafold-2.3.1/alphafold/data/pipeline.py", line 215, in process
hhblits_bfd_uniref_result = run_msa_tool(
File "/public/home/AF-soft/alphafold-2.3.1/alphafold/data/pipeline.py", line 96, in run_msa_tool
result = msa_runner.query(input_fasta_path)[0]
File "/public/home/AF-soft/alphafold-2.3.1/alphafold/data/tools/hhblits.py", line 146, in query
with open(a3m_path) as f:
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpzszd_m92/output.a3m'
It happens this problem when i run reduced databases: I0424 23:10:28.811640 47652452934528 utils.py:36] Started HHblits query I0424 23:10:29.603082 47652452934528 utils.py:40] Finished HHblits query in 0.791 seconds Traceback (most recent call last): File "/public/home/AF-soft/alphafold-2.3.1/run_alphafold.py", line 432, in app.run(main) File "/public/home/.conda/envs/alphafold/lib/python3.8/site-packages/absl/app.py", line 312, in run _run_main(main, args) File "/public/home/.conda/envs/alphafold/lib/python3.8/site-packages/absl/app.py", line 258, in _run_main sys.exit(main(argv)) File "/public/home/AF-soft/alphafold-2.3.1/run_alphafold.py", line 408, in main predict_structure( File "/public/home/AF-soft/alphafold-2.3.1/run_alphafold.py", line 172, in predict_structure feature_dict = data_pipeline.process( File "/public/home/AF-soft/alphafold-2.3.1/alphafold/data/pipeline.py", line 215, in process hhblits_bfd_uniref_result = run_msa_tool( File "/public/home/AF-soft/alphafold-2.3.1/alphafold/data/pipeline.py", line 96, in run_msa_tool result = msa_runner.query(input_fasta_path)[0] File "/public/home/AF-soft/alphafold-2.3.1/alphafold/data/tools/hhblits.py", line 146, in query with open(a3m_path) as f: FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpzszd_m92/output.a3m'
Can you help me? Thank you very much!!!