fix misconfigured path to the templates db

google-deepmind / alphafold3

AlphaFold 3 inference pipeline.

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fix misconfigured path to the templates db #27

Closed aozalevsky closed 1 week ago

aozalevsky commented 1 week ago

fixes #26 so hmmsearch can proceed:

I1113 09:18:38.635883 140015615063616 subprocess_utils.py:68] Launching subprocess "/hmmer/bin/hmmsearch --noali --cpu 8 --F1 0.1 --F2 0.1 --F3 0.1 -E 100 --incE 100 --domE 100 --incdomE 100 -A /tmp/tmp_lkirt4p/output.sto /tmp/tmp_lkirt4p/query.hmm databases/pdb_seqres_2022_09_28.fasta"
I1113 09:18:44.688891 140015615063616 subprocess_utils.py:97] Finished Hmmsearch in 6.053 seconds

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Augustin-Zidek commented 1 week ago

Fixed slightly differently in https://github.com/google-deepmind/alphafold3/commit/3c27a149a25b6c8930ce68cfeb2a6cbb9afb3359. Thanks again!