Getting the scores (plddt, pae)

google-deepmind / alphafold3

AlphaFold 3 inference pipeline.

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Getting the scores (plddt, pae) #63

Closed vecos1990 closed 4 days ago

vecos1990 commented 6 days ago

I would be delighted if someone could share a script or procedure to extract the plddt score and if possible the plots of msa, plddt, pae ... for better results analysis

aozalevsky commented 6 days ago

There are plenty of examples on GitHub: https://github.com/grandrea/Alphafold-analysis by @grandrea, for instance.

P.S. not a DeepMind employee; was just passing by.

P.P.S. duplicate of #52

Augustin-Zidek commented 4 days ago

Agreed with the comment above, please also refer to https://github.com/google-deepmind/alphafold3/blob/main/docs/output.md.

Augustin-Zidek commented 1 day ago