This is not a bug but rather a request that, however, I am sure everybody will stand by: please add a way to specify in the input json file what is the number of the starting residue of each chain.
As users, we almost always have to do this "by hand" a posteriori, since AlphaFold numbering start defaults to 1 and - in the majority of cases - does not match the one we actually work with. This is a small change that could make things much easier for everybody, so I hope you'll take the suggestion into consideration. Thank you!
This is not a bug but rather a request that, however, I am sure everybody will stand by: please add a way to specify in the input json file what is the number of the starting residue of each chain.
As users, we almost always have to do this "by hand" a posteriori, since AlphaFold numbering start defaults to 1 and - in the majority of cases - does not match the one we actually work with. This is a small change that could make things much easier for everybody, so I hope you'll take the suggestion into consideration. Thank you!