Closed truatpasteurdotfr closed 4 years ago
Could you verify if installing gast
resolves the issue?
pip install --user gast==0.2.2
Same issue here although the rest of the code runs:
WARNING:tensorflow:Entity <bound method BatchNormalization.call of <tensorflow.python.layers.normalization.BatchNormalization object at 0x7f8717088208>> could not be transformed and will be executed as-is. Please report this to the AutgoGraph team. When filing the bug, set the verbosity to 10 (on Linux, `export AUTOGRAPH_VERBOSITY=10`) and attach the full output. Cause: converting <bound method BatchNormalization.call of <tensorflow.python.layers.normalization.BatchNormalization object at 0x7f8717088208>>: AssertionError: Bad argument number for Name: 3, expecting 4 I0306 02:18:36.437770 140705132992256 secstruct.py:58] Creating secstruct Tensor("competitionsep/contacts_net/concat_2:0", shape=(?, 128, 256), dtype=float32, device=/device:CPU:0)
In Anaconda environment with Debian + PyTorch + CUDA set up on a GCP instance, pip install --user gast==0.2.2
didn't solve the problem
thanks adding gast==0.2.2
fixed the issue (both cpu and gpu version).
cpu only version:
(alphafold-cpu) [tru@ld19-1020 alphafold-cpu]$ python3 -m pip list
Package Version
---------------------- -----------
absl-py 0.8.1
astor 0.8.1
cloudpickle 1.3.0
contextlib2 0.6.0.post1
decorator 4.4.2
dm-sonnet 1.35
gast 0.2.2
google-pasta 0.1.8
grpcio 1.27.2
h5py 2.10.0
Keras-Applications 1.0.8
Keras-Preprocessing 1.1.0
Markdown 3.2.1
numpy 1.16.0
pip 20.0.2
protobuf 3.11.3
semantic-version 2.8.4
setuptools 41.0.0
six 1.12.0
tensorboard 1.14.0
tensorflow 1.14.0
tensorflow-estimator 1.14.0
tensorflow-probability 0.7.0
termcolor 1.1.0
Werkzeug 1.0.0
wheel 0.34.2
wrapt 1.12.0
gpu version:
(alphafold) [tru@ld19-1020 alphafold]$ python3 -m pip list
Package Version
---------------------- -----------
absl-py 0.8.1
astor 0.8.1
cloudpickle 1.3.0
contextlib2 0.6.0.post1
decorator 4.4.1
dm-sonnet 1.35
gast 0.2.2
google-pasta 0.1.8
grpcio 1.27.2
h5py 2.10.0
Keras-Applications 1.0.8
Keras-Preprocessing 1.1.0
Markdown 3.2.1
numpy 1.16.0
pip 20.0.2
protobuf 3.11.3
semantic-version 2.8.4
setuptools 41.0.0
six 1.12.0
tensorboard 1.14.0
tensorflow 1.14.0
tensorflow-estimator 1.14.0
tensorflow-gpu 1.14.0
tensorflow-probability 0.7.0
termcolor 1.1.0
Werkzeug 1.0.0
wheel 0.34.2
wrapt 1.12.0
running the plain cpu version I get a lot of: