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connectomics
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Move default config registration and instantiation into connectomics.subvolume_processor.
#149
copybara-service[bot]
opened
1 day ago
0
Convert model config to frozen dict.
#148
copybara-service[bot]
closed
3 days ago
0
Update serialization for BoxGenerator
#147
copybara-service[bot]
closed
1 week ago
0
Pull out `load_json` into its own function for use elsewhere.
#146
copybara-service[bot]
closed
1 week ago
0
- Rename processor configs from `ProcessorNameConfig` to `Config`.
#145
copybara-service[bot]
closed
1 week ago
0
Move `downsample_area` into public connectomics repository.
#144
copybara-service[bot]
closed
1 week ago
0
Add a metric to count positive values.
#143
copybara-service[bot]
closed
2 weeks ago
0
Update TfGrainCheckpointHandler.
#142
copybara-service[bot]
closed
1 month ago
0
- Create `RelaxMesh` subvolume processor. Also adds private interfaces to SubvolumeProcessors for data paths supporting internal vs external data loading.
#141
copybara-service[bot]
closed
1 month ago
0
Add jax/flax utilities.
#140
copybara-service[bot]
closed
1 month ago
0
Combine metadata.py's VolumeMetadata and Volume into a single class.
#139
copybara-service[bot]
closed
1 month ago
0
Add option for padding when increasing size with Interpolation decorator.
#138
copybara-service[bot]
closed
1 month ago
0
Add async task support for running pexternal binaries in-process.
#137
copybara-service[bot]
closed
2 months ago
0
Add wrapper class to access ExternalBinaries to connectomics.
#136
copybara-service[bot]
closed
2 months ago
0
Fix NamedTuple equality for tuple comparison.
#135
copybara-service[bot]
closed
2 months ago
0
Add `NamedTuple`s for XYZ/ZYX and XYZC/CZYX tuples, allowing for both named accessors e.g. `.x`, and indexable support. Statically typed so they cannot be accidentally passed to functions expecting a same length tuple, and allows function/member parameter type annotations to ensure ordering.
#134
copybara-service[bot]
closed
2 months ago
0
Add ReconcileAndFilterFlows processor.
#133
copybara-service[bot]
closed
2 months ago
0
Updates to `EstimateFlow` stages.
#132
copybara-service[bot]
closed
2 months ago
0
to_slice -> to_slice4d
#131
copybara-service[bot]
closed
2 months ago
0
Avoid: "DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation."
#130
copybara-service[bot]
closed
2 months ago
0
Extend `build_mask` to support arbitrary data loading
#129
copybara-service[bot]
closed
2 months ago
0
Rename BaseVolume to Volume and support Metadata.
#128
copybara-service[bot]
closed
2 months ago
0
Create DecoratorSpecs definitions that are compatible with TensorStore.
#127
copybara-service[bot]
closed
2 months ago
0
Internal cleanup
#126
copybara-service[bot]
closed
2 months ago
0
Add metadata and utilities for manipulating dataclasses to Connectomics.
#125
copybara-service[bot]
closed
3 months ago
0
Make EstimateFlow's config class dataclasses_json compatible.
#124
copybara-service[bot]
opened
3 months ago
0
Remove ImmutableArray and MutableArray.
#123
copybara-service[bot]
closed
3 months ago
0
Add training utilities.
#122
copybara-service[bot]
closed
3 months ago
0
Add utilities for instantiating JAX models from config files.
#121
copybara-service[bot]
closed
3 months ago
0
Move the convstack model to the connectomics repository.
#120
copybara-service[bot]
closed
3 months ago
0
Add report_time.
#119
copybara-service[bot]
closed
3 months ago
0
Keep track of 'dim' in get_rag.
#118
copybara-service[bot]
closed
3 months ago
0
[numpy] Fix users of NumPy APIs that are removed in NumPy 2.0.
#117
copybara-service[bot]
closed
3 months ago
0
- Convert EstimateFlow to use Dataclasses as a configuration parameter, and update pipelines to support.
#116
copybara-service[bot]
closed
4 months ago
0
No public description
#115
copybara-service[bot]
closed
4 months ago
1
Add lowpass filter decorator.
#114
copybara-service[bot]
closed
4 months ago
0
Add StdProjection to compute standard deviation over given dimension.
#113
copybara-service[bot]
closed
7 months ago
0
Support schema with chunksizes set to `None`.
#112
copybara-service[bot]
closed
7 months ago
0
Make bounding box errors more informative.
#111
copybara-service[bot]
closed
8 months ago
0
Silence some pytype errors.
#110
copybara-service[bot]
closed
9 months ago
0
Support adding custom search paths.
#109
copybara-service[bot]
closed
9 months ago
0
union find test.
#108
copybara-service[bot]
closed
9 months ago
0
Add more utils to connectomics/common and ffn/utils
#107
copybara-service[bot]
closed
9 months ago
0
Add union_find and object_utils.
#106
copybara-service[bot]
closed
9 months ago
0
Add SubvolumeProcessors for filling holes and merging internal objects.
#105
copybara-service[bot]
closed
10 months ago
0
Move split_disconnected_components from FFN repo to connectomics.
#104
copybara-service[bot]
closed
10 months ago
0
Add module for correcting merge errors based on subcompartment consistency.
#103
copybara-service[bot]
closed
10 months ago
0
Add processors for contrast normalization.
#102
copybara-service[bot]
closed
10 months ago
0
Add processors for image filtering.
#101
copybara-service[bot]
closed
10 months ago
0
Keep indices in a dict.
#100
copybara-service[bot]
closed
11 months ago
0
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