search

google / deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
BSD 3-Clause "New" or "Revised" License
222 stars 37 forks source link

Docker or Singularity #15

Closed AMMMachado closed 2 years ago

AMMMachado commented 2 years ago

Hi,

First of all thank you for this amazing program. I'm working in a cluster with the centos7. I tried to install the software several times, always with errors in the pip/Python distributions. Could you make available some docker and/or singularity for the deep consensus? Best Regards Andre

MariaNattestad commented 2 years ago

Hi Andre,

Yes, we are currently working on a version of DeepConsensus which will be easier to install with pip, and this new version will also include a docker image that should work with singularity as well.

Maria

gevro commented 2 years ago

Great to hear! Is there an estimate for when this might be available?

AMMMachado commented 2 years ago

Thank you @MariaNattestad . Currently, we are performing several genome assemblies, and we intend to include deepconsensus in our PcabioHifi pipeline. Do you have some time estimation for the next stable release?

André

MariaNattestad commented 2 years ago

We're hoping to have a release ready by the end of January, assuming all goes well :)

MariaNattestad commented 2 years ago

The release is now available! https://github.com/google/deepconsensus/releases/tag/v0.2.0