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google / deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
BSD 3-Clause "New" or "Revised" License
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pip install deepconsensus==0.1.0 fails... #2

Closed sjin09 closed 3 years ago

sjin09 commented 3 years ago

Hello,

I don't have sudo privileges on my server and I would love to try using deepconsensus. I have attempting installing deepconsensus through the recommended method.

The following commands: 

pip install deepconsensus==0.1.0
pip install deepconsensus

returns

ERROR: Could not find a version that satisfies the requirement deepconsensus (from versions: none)
ERROR: No matching distribution found for deepconsensu

The server details are as follows: NAME="Ubuntu" VERSION="18.04.5 LTS (Bionic Beaver)" ID=ubuntu ID_LIKE=debian PRETTY_NAME="Ubuntu 18.04.5 LTS" VERSION_ID="18.04" HOME_URL="https://www.ubuntu.com/" SUPPORT_URL="https://help.ubuntu.com/" BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/" PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy" VERSION_CODENAME=bionic UBUNTU_CODENAME=bionic

Regards, Sangjin

armintoepfer commented 3 years ago

Please see https://github.com/google/deepconsensus/issues/1

sjin09 commented 3 years ago 
conda create -n py3 python=3.6
source activate py3
pip install deepconsensus==0.1.0