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google / deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
BSD 3-Clause "New" or "Revised" License
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download params.json but Connection refused. #40

Closed ymwang233 closed 2 years ago

ymwang233 commented 2 years ago

When I download the model by commandgsutil cp -r gs://brain-genomics-public/research/deepconsensus/models/v0.3/model_checkpoint/params.json , I get the following error. How should I solve it, is there any other way to download params.json file？ INFO 0909 10:04:28.460050 retry_util.py] Retrying request, attempt #20... INFO 0909 10:05:00.531276 retry_util.py] Retrying request, attempt #21... INFO 0909 10:05:32.603370 retry_util.py] Retrying request, attempt #22... OSError: Connection refused.

ymwang233 commented 2 years ago

The reason may be that I am a Chinese user and cannot access Google Cloud. I solved the problem after switching to a Hong Kong server.

ymwang233 commented 2 years ago

I want to know which path should I put this model file so that it can be called to

ymwang233 commented 2 years ago

I solved the problem when I put the model in python3.8/site-packages/tensorflow/python/lib/