google / deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
BSD 3-Clause "New" or "Revised" License
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HPC resource managment not working with deepconsensus #52

Closed MmasterT closed 1 year ago

MmasterT commented 1 year ago

Hello, I have a few partitions in the HPC of my work, and some of them have nodes with multiple GPUs. Since this is a shared space I would like to not block a whole node when I can use just 1 or 2 GPUs, but deepconsensus uses all of the GPUs available even if I limit the number of requested GPUs in SLURM. There is a way to avoid that deepconsensus uses all the available resources?