parallelizing consensus calling

google / deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

BSD 3-Clause "New" or "Revised" License

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Closed sjin09 closed 3 years ago

sjin09 commented 3 years ago

Hello,

Is it correct that deepConsensus currently only supports single thread execution at the moment?

I couldn't find a flag for threads python3 -m deepconsensus.scripts.run_deepconsensus --helpfull from the help section or from the https://github.com/google/deepconsensus/tree/main/deepconsensus.

Regards, Sangjin