The deep variant wrapper dv_call_variants.py crushing when installed using conda.

[akiss-me]

the deep variant wrapper dv_call_variants.py crushing when installed using conda.

Setup

• Ubuntu 20.04:
• DeepVariant version - 1.4.0:
• Installation method - Conda
• Type of data - sequencing, illumina

Steps to reproduce:

• Command: dv_call_variants.py --outfile OUTFILE --examples EXAMPLES --sample SAMPLE

• Error trace: (if applicable) Traceback (most recent call last): File "/tmp/Bazel.runfiles_zviaa5zy/runfiles/com_google_deepvariant/deepvariant/call_variants.py", line 39, in import numpy as np ModuleNotFoundError: No module named 'numpy'

numpy installed in enviroment

[akolesnikov]

Hi akiss-me,

The conda-deepvariant package is a community contribution by @chapmanb and is not maintained directly by the DeepVariant team -- we are not experts on Conda, unfortunately. You may try to run using Singularity. See Quick Start