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Flood-Filling Networks for instance segmentation in 3d volumes.
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Evaluation the segmentation #41

Open Levishery opened 1 year ago

Levishery commented 1 year ago

In the paper "High-Precision Automated Reconstruction of Neurons with Flood-filling Networks" the result is evaluated through edge accuracy and expected run length. I noticed that in doc it mentioned that the segmentation evaluation code is currently not part of the FFN repository. Is that code available somewhere?

virenjain commented 1 year ago

+Michal Januszewski @.***>

Hi, there is an implementation of ERL in this package: https://github.com/funkelab/funlib.evaluate although we have not used that code ourselves.

Best, --Viren

On Sat, Jun 3, 2023 at 8:10 PM Levishery @.***> wrote:

In the paper "High-Precision Automated Reconstruction of Neurons with Flood-filling Networks" the result is evaluated through edge accuracy and expected run length. I noticed that in doc https://github.com/google/ffn/tree/master/doc it mentioned that the segmentation evaluation code is currently not part of the FFN repository. Is that code available somewhere?

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