Added S3 dep and some version updates

[bashir2]

Description of what I changed

Fixes #1011 It also updates some deps/versions.

E2E test

TESTED:

Did a sample run with a S3 bucket for the output and verified the output files are created (note this needed AWS_REGION, AWS_SECRET_ACCESS_KEY and AWS_ACCESS_KEY_ID to be set):

java -cp ./pipelines/batch/target/batch-bundled.jar com.google.fhir.analytics.FhirEtl --sourceJsonFilePattern=[PATH]/synthea-hiv/768_patients/* --resourceList="Patient" --parallelism=30 --outputParquetPath=s3://[BUCKET]/parquet_from-json_768_flink --runner=FlinkRunner

Checklist: I completed these to help reviewers :)

• [x] I have read and will follow the review process.

• [x] I am familiar with Google Style Guides for the language I have coded in.

  No? Please take some time and review Java and Python style guides.

• [x] My IDE is configured to follow the Google code styles.

  No? Unsure? -> configure your IDE.

• [ ] I have added tests to cover my changes. (If you refactored existing code that was well tested you do not have to add tests)

• [x] I ran mvn clean package right before creating this pull request and added all formatting changes to my commit.

• [x] All new and existing tests passed.

• [x] My pull request is based on the latest changes of the master branch.

  No? Unsure? -> execute command git pull --rebase upstream master

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 50.60%. Comparing base (5eb81a2) to head (2fe1dff).

Additional details and impacted files

```diff @@ Coverage Diff @@ ## master #1066 +/- ## ========================================= Coverage 50.60% 50.60% Complexity 674 674 ========================================= Files 91 91 Lines 5511 5511 Branches 707 707 ========================================= Hits 2789 2789 Misses 2461 2461 Partials 261 261 ```

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