Error When Visualizing Local N5 File in Neuroglancer

[ZhenbangZhang]

I followed the steps on this GitHub issue to visualize my local N5 file, but the final result looks like this (referring to the image). What could be the reason for this?

And this is my attributes.json

{
    "scales":[[
        128.0,
        128.0,
        128.0
    ]],
    "blockSize": [
        128,
        128,
        64
    ],
    "compression": {
        "level": -1,
        "type": "gzip",
        "useZlib": false
    },
    "dataType": "uint8",
    "dimensions": [
        1275,
        1185,
        1061
    ],
    "pixelResolution": {
        "dimensions": [
            128.0,
            128.0,
            128.0
        ],
        "unit": "nm"
    },
    "transform": {
        "axes": [
            "z",
            "y",
            "x"
        ],
        "order": "C",
        "scale": [
            128.0,
            128.0,
            128.0
        ],
        "translate": [
            60.0,
            60.0,
            60.0
        ],
        "units": [
            "nm",
            "nm",
            "nm"
        ]
    }
}

[xgui3783]

Try clicking "create as an image layer" at bottom right? (In yellow)

[ZhenbangZhang]

Try clicking "create as an image layer" at bottom right? (In yellow)

Thank you very much, I have successfully visualized the 3D structure. Does Neuroglancer provide a feature for high-resolution screenshots?

[jbms]

You can do that using the Python module "neuroglancer.tool.screenshot" included in the Python package.