The current content corresponds to table google.com:biggene:1000genomes.variants1kG which was created using a prototype VCF import pipeline.
The data in table google.com:biggene:1000genomes.phase1_variants was imported to the Variant Store and then exported to BigQuery - all via the via the Google Genomics API.
The schemas are slightly different, update the content to point to the new table and utilize the updated column names. Note that genotype is now an array of integers instead of two fields first_allele and second_allele which will cause some noticeable changes to the queries.
deflaux
commented
10 years ago
The current content corresponds to table google.com:biggene:1000genomes.variants1kG which was created using a prototype VCF import pipeline.
The data in table google.com:biggene:1000genomes.phase1_variants was imported to the Variant Store and then exported to BigQuery - all via the via the Google Genomics API.
The schemas are slightly different, update the content to point to the new table and utilize the updated column names. Note that genotype is now an array of integers instead of two fields
first_alleleandsecond_allelewhich will cause some noticeable changes to the queries.