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googlegenomics
/
dataflow-java
Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.
Apache License 2.0
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Bump com.github.samtools:htsjdk from 1.128 to 3.0.1
#227
dependabot[bot]
opened
1 year ago
0
Bump junit:junit from 4.11 to 4.13.1
#226
dependabot[bot]
opened
1 year ago
0
Security Policy violation Binary Artifacts
#225
google-allstar-prod[bot]
opened
1 year ago
28
Deprecate this repo?
#224
tswast
opened
4 years ago
0
Getting started instructions link in README 404s
#223
tswast
opened
4 years ago
0
Store data in info field of Reads proto into BigQuery table.
#222
nmousavi
opened
5 years ago
0
Validate the given BigQuery table in LoadReadsToBigQuery pipeline.
#221
nmousavi
opened
5 years ago
0
Add a pipeline that loads BAM into BigQuery
#220
nmousavi
closed
5 years ago
3
Update CalculateCoverage integration test.
#219
deflaux
closed
6 years ago
1
Improve performance of CalculateCoverage.
#218
deflaux
closed
6 years ago
2
Add file list support to CalculateCoverage.
#217
deflaux
closed
6 years ago
2
Update to a newer version of htsjdk dependency.
#216
deflaux
opened
6 years ago
0
Upgrade to Apache Beam (Dataflow 2.x).
#215
deflaux
closed
6 years ago
1
Update ShardedBAMWriting to be compatible with parallel BAM reading.
#214
deflaux
opened
6 years ago
0
Identity By State variant streamer fails with write error
#213
pbilling
opened
7 years ago
1
Bump utils-java dependency.
#212
deflaux
closed
7 years ago
2
Make test result download robust to eventual consistency.
#211
deflaux
closed
7 years ago
3
VerifyBamId update
#210
sergipv
closed
7 years ago
14
Bump gRPC and Dataflow dependencies.
#209
deflaux
closed
7 years ago
3
Bump utils-java dependency.
#208
deflaux
closed
7 years ago
3
Only set the project id in the request when applicable.
#207
deflaux
closed
8 years ago
2
Bump utils-java dependency.
#206
deflaux
closed
8 years ago
4
Dependent utils-java and grpc java bump in pom.xml
#205
pgrosu
closed
6 years ago
2
Update to v1 version of quota exceeded error.
#204
deflaux
closed
8 years ago
2
Bug fix for IdentifyPrivateVariants.
#203
deflaux
closed
8 years ago
2
Push AnnotationUtils down into utils-java
#202
deflaux
opened
8 years ago
0
add support for STRICT intra-shard boundary
#201
deflaux
opened
8 years ago
0
Enforce window within merge logic.
#200
deflaux
closed
8 years ago
6
Bump dataflow-sdk dependency.
#199
deflaux
closed
8 years ago
2
Bump io.netty dependency.
#198
deflaux
closed
8 years ago
2
Update io.netty dependency.
#197
deflaux
closed
6 years ago
2
Pass call sets and use variant merge strategies.
#196
deflaux
closed
8 years ago
1
Refactor variant merge strategy.
#195
deflaux
closed
8 years ago
1
Update variant pipelines to take a subset of call sets.
#194
deflaux
closed
8 years ago
1
Bump dataflow-sdk dependency.
#193
deflaux
closed
8 years ago
1
Bump guava dependency.
#192
deflaux
closed
8 years ago
1
Bug fix for range representation of Variants in AnnotateVariants.java.
#191
cmclean
closed
8 years ago
3
Add integration test for DeleteVariants pipeline.
#190
deflaux
opened
8 years ago
0
Bug fixes for pipelines using partial responses.
#189
deflaux
closed
8 years ago
2
Add IdentifyPrivateVariants and DeleteVariants pipelines.
#188
deflaux
closed
8 years ago
2
Update all pipelines to use partial responses
#187
deflaux
closed
8 years ago
2
Add integration test for Calculate Coverage.
#186
deflaux
closed
6 years ago
1
Update to v1 of genomics API.
#185
deflaux
closed
8 years ago
6
Clean up imports and whitespace.
#184
deflaux
closed
8 years ago
1
Handle empty sites and large sites.
#183
deflaux
closed
8 years ago
2
Update PCA and IBS to operate over a set of sites.
#182
deflaux
closed
8 years ago
2
Consider dividing integration tests into two groups.
#181
deflaux
opened
8 years ago
0
Rearrange code.
#180
deflaux
closed
8 years ago
7
Fix "Local variable declaration hides another field or variable" warn…
#179
deflaux
closed
8 years ago
2
Update Proto2Coder -> ProtoCoder
#178
deflaux
closed
8 years ago
1
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