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googlegenomics / gcp-deepvariant-runner

This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.
Apache License 2.0
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Missing gcsfuse docker #30

Open ConorMesser opened 2 months ago

ConorMesser commented 2 months ago

There use to be a gcsfuse docker stored at gcr.io/cloud-genomics-pipelines/gcsfuse:latest. This docker is referenced by this library as well as by dsub (https://github.com/DataBiosphere/dsub/blob/main/dsub/providers/google_v2_base.py#L51). However, when running dsub today I ran into this error despite my code working fine last week:

Execution failed: generic::unknown: pulling image: docker pull: running ["docker" "pull" "gcr.io/cloud-genomics-pipelines/gcsfuse:latest"]: exit status 1 (standard error: "Error response from daemon: Head \"https://gcr.io/v2/cloud-genomics-pipelines/gcsfuse/manifests/latest\": denied: Permission \"artifactregistry.repositories.downloadArtifacts\" denied on resource \"projects/cloud-genomics-pipelines/locations/us/repositories/gcr.io\" (or it may not exist)\n")

Do you know why this docker image is no longer available or accessible as of the last few days?

pgrosu commented 2 months ago

And what happens if you build it yourself from this?

https://github.com/GoogleCloudPlatform/gcsfuse/blob/master/Dockerfile

ConorMesser commented 2 months ago

I don’t have time to test this today but will try building the docker myself next week.