Hello,
I used gffcompare to merge two gtf files with the following command: gffcompare -i gtffiles.txt
However, it seems that there are a falsely merged gene regions that are in fact two different genes. Do you have suggestions to deal with this?
Is there a way to specify to only merge after they share at least 2 exons or at least X amount of overlapping base pairs?
I would be gratefull for your reply,
Kind regards,
Ruth
Hello, I used gffcompare to merge two gtf files with the following command: gffcompare -i gtffiles.txt
However, it seems that there are a falsely merged gene regions that are in fact two different genes. Do you have suggestions to deal with this? Is there a way to specify to only merge after they share at least 2 exons or at least X amount of overlapping base pairs?
I would be gratefull for your reply, Kind regards, Ruth