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gpertea / gffcompare

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
MIT License
198 stars 32 forks source link

make: *** [gffcompare.o] Error 1 #56

Closed TommySchooner closed 4 years ago

TommySchooner commented 4 years ago

Hi there,

I am trying to install the gffcompare. Below are my commands. I wonder what are the problems? Thank you!

I used the GitHub: git clone https://github.com/gpertea/gffcompare

apple@apples-MBP-2 gffcompare % make release c++ -O3 -DNDEBUG -std=c++0x -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -c gffcompare.cpp -o gffcompare.o warning: unknown warning option '-Wno-class-memaccess'; did you mean '-Wno-class-varargs'? [-Wunknown-warning-option] gffcompare.cpp:802:17: error: no matching function for call to 'transcriptMatch' char tmatch=transcriptMatch((super->qmrnas[i]),(super->rmrnas[j]), ovlen, terminalMatchRange); ^~~~~~~ ../gclib/gff.h:63:6: note: candidate function not viable: requires 3 arguments, but 4 were provided char transcriptMatch(GffObj& a, GffObj& b, int& ovlen); //generic transcript match test ^ 1 warning and 1 error generated. make: *** [gffcompare.o] Error 1

gpertea commented 4 years ago

Is it possible that you already had an older copy of gclib in the parent directory there (../gclib)? If so, you may want to remove that directory and try the make release command again, which should pull the latest version of gclib as needed. Even better would be to download and compile the prepared source package gffcompare-0.11.7.tar.gz either from the releases page (https://github.com/gpertea/gffcompare/releases) or from the official web page (http://ccb.jhu.edu/software/stringtie/gffcompare.shtml#gffcompare_dl), that package always has the latest/matching version of gclib included needed, it is self-contained.

TommySchooner commented 4 years ago

I see! It is working now for me after I have download and compile the prepared source package! Thank you very much for helping!