Open junghoon-shin opened 3 years ago
Here is my .stats file.
# gffcompare v0.11.7 | Command line was: #gffcompare-0.11.7.Linux_x86_64/gffcompare -r gencode.v19.annotation.gtf -o gffcompare_stringtie_merged stringtie_merged.gtf # #= Summary for dataset: stringtie_merged.gtf # Query mRNAs : 612833 in 89388 loci (566229 multi-exon transcripts) # (29760 multi-transcript loci, ~6.9 transcripts per locus) # Reference mRNAs : 194187 in 54800 loci (169307 multi-exon) # Super-loci w/ reference transcripts: 46595 #-----------------| Sensitivity | Precision | Base level: 100.0 | 27.6 | Exon level: 84.2 | 46.6 | Intron level: 99.8 | 51.1 | Intron chain level: 99.9 | 29.9 | Transcript level: 98.2 | 31.1 | Locus level: 95.6 | 50.9 | Matching intron chains: 169199 Matching transcripts: 190667 Matching loci: 52414 Missed exons: 0/559962 ( 0.0%) Novel exons: 275572/1115730 ( 24.7%) Missed introns: 639/343915 ( 0.2%) Novel introns: 137224/671588 ( 20.4%) Missed loci: 0/54800 ( 0.0%) Novel loci: 42793/89388 ( 47.9%) Total union super-loci across all input datasets: 89388 612833 out of 612833 consensus transcripts written in gffcompare_stringtie_merged.annotated.gtf (0 discarded as redundant)
I see several inconsistencies here.
Am I misunderstanding something here?
Here is my .stats file.
I see several inconsistencies here.
Am I misunderstanding something here?