disable discard duplicate

gpertea / gffcompare

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

MIT License

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disable discard duplicate #62

Open BeatrizdeToledo opened 3 years ago

BeatrizdeToledo commented 3 years ago

Good evening, I would like to use the GFF compare for comparing two gtf files generated from long-read sequencing. However, part of the duplicate query transfrags discarded, and I can not find a way to disable it. this was the code gffcompare --no-merge file1.gtf file2.gtf --strict-match

Thank you beatriz

omarelgarwany commented 1 month ago

I am also running into this issue. I can't find a way to disable discarding duplicate transfrags within the same sample. I also tried -d 0 -s 0 --strict-match, but it still does that. Have you found a way around that?