gpertea / gffcompare

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
MIT License
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A question on gffcompare #80

Closed sanyalab closed 2 months ago

sanyalab commented 11 months ago

Hi,

Can this tool be adapted to get sensitivity and specificity values for each final reference gene model, when compared to all the evidences (query) that support the ref gene model? I am hoping to get a classification code for each reference gene model, along with the exon and intron chain level Sn and Sp values. At present this only happens for the query.

Can the tool be tweaked to get this?

Thanks Abhijit