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gpertea / gffcompare

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
MIT License
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No sensitivity or precision stats reported if multiple gffs given as input #83

Open gbdias opened 9 months ago

gbdias commented 9 months ago

Hi,

If I run gffcompare 0.12.6 on an input list of 12 gff3 files my .stats file looks like this (i.e. no sensitivity/precision results):

# gffcompare v0.12.6 | Command line was:
#gffcompare -R -r dm6_pcgs_clustered.gff3 -o cmp_clust -i list_gffs.txt
#

 Total union super-loci across all input datasets: 33737
  (10301 multi-transcript, ~2.0 transcripts per locus)
69048 out of 69048 consensus transcripts written in cmp_clust.combined.gtf (0 discarded as redundant)

If I run on individual gffs I do get all sensitivity and precision calculations. Any reason why this is not output in the -i case?

Thanks.