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gpertea / gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
MIT License
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Extract sequence features from BGZIPped genome sequences #36

Open lucventurini opened 5 years ago

lucventurini commented 5 years ago

Currently gffread dies with segmentation fault when trying to extract features from a BGZIPped, indexed genome sequence.

gpertea commented 5 years ago

Indeed, that's not supported (yet). Shouldn't be that hard to add, I suppose - though I generally dislike adding external dependencies like bgzf or htslib unless really needed.