This is more of a question than anything. I was hoping someone could tell me why stringtie produces the models it does in this
.
What you are looking at here in order is...
Output from transdecoder
Output from stringtie.
Intermediate output from my pipeline that doens't matter for this inquiry
Intermediate output from transdecoder.
Alignments of my reads that produced this gtf file
...I get that transcript assembly in low coverage regions is likely to be error prone. I just don't understand why this error occured. What made stringtie want to break up these alignments into two different transcripts?
This is more of a question than anything. I was hoping someone could tell me why stringtie produces the models it does in this
.
What you are looking at here in order is...
...I get that transcript assembly in low coverage regions is likely to be error prone. I just don't understand why this error occured. What made stringtie want to break up these alignments into two different transcripts?