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gpertea / stringtie

Transcript assembly and quantification for RNA-Seq
MIT License
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clarification on TPM (-T <min_tpm>) option in Stringtie merge #243

Open vinay-swamy opened 5 years ago

vinay-swamy commented 5 years ago

If I use Stringtie to merge multiple gtfs, and use -T 1, does the mean that a transcript must have a minimum of 1 TPM in at least 1 but not all samples to be included in the merge, or does this mean a transcript must be at 1 TPM or greater in all samples to be included?