Error in prepDE.py - Githubissues

gpertea / stringtie

Transcript assembly and quantification for RNA-Seq

MIT License

365 stars 76 forks source link

Error in prepDE.py #245

Closed nourelislam closed 4 years ago

nourelislam commented 4 years ago

Hi,

I am using prepDE.py for getting an estimation matrix with Deseq2 but I encounter this error: (0, 'RNAseq_33-C') (1, 'RNAseq_33-S') Traceback (most recent call last): File "/home/nourelislam/anaconda3/envs/ngs/bin/prepDE.py", line 255, in geneDict.setdefault(geneIDs[i],{}) #gene_id KeyError: '33-S.28019.1'

Please Help @gpertea

gpertea commented 4 years ago

This seems to be the same issue with #234 and #232, so it should be fixed by v2.0.4 release.