stringtiev2.1.7
there is my command:
for i in .bam ; do i=${i%.bam}; stringtie -A gene_abund/${i}_gene_abund.tab -e -G ~/gtf/ensembl/Sus_scrofa.Sscrofa11.1.104.chr.gtf -o stringtie/${i}.gtf ${i}.bam & done
and there are results:
wc -l *.tab
30480 12_gene_abund.tab
30482 18_gene_abund.tab
30480 1_gene_abund.tab
30479 21_gene_abund.tab
30479 23_gene_abund.tab
30479 2_gene_abund.tab
30478 4_gene_abund.tab
30479 9_gene_abund.tab
So,am i wrong in any parameter，and how to modify it
Thank you!
hello,
stringtiev2.1.7 there is my command: for i in .bam ; do i=${i%.bam}; stringtie -A gene_abund/${i}_gene_abund.tab -e -G ~/gtf/ensembl/Sus_scrofa.Sscrofa11.1.104.chr.gtf -o stringtie/${i}.gtf ${i}.bam & done
and there are results: wc -l *.tab 30480 12_gene_abund.tab 30482 18_gene_abund.tab 30480 1_gene_abund.tab 30479 21_gene_abund.tab 30479 23_gene_abund.tab 30479 2_gene_abund.tab 30478 4_gene_abund.tab 30479 9_gene_abund.tab So,am i wrong in any parameter，and how to modify it Thank you!