Recommendations for calling StringTie with RNA-seq data from small-genome organisms such as S. cerevisiae

gpertea / stringtie

Transcript assembly and quantification for RNA-Seq

MIT License

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Recommendations for calling StringTie with RNA-seq data from small-genome organisms such as S. cerevisiae #386

Open kalavattam opened 1 year ago

kalavattam commented 1 year ago

Hi, are there any general recommendations for calling StringTie to assemble transcriptomes using RNA-seq data from small-genome organisms such as S. cerevisiae and other fungi? That is, adjusting certain parameters from their defaults values, etc.