Whether stringtie will include novel transcripts into ballgown file? What other tools can be used to visualize novel transcripts?

gpertea / stringtie

Transcript assembly and quantification for RNA-Seq

MIT License

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Whether stringtie will include novel transcripts into ballgown file? What other tools can be used to visualize novel transcripts? #401

Open guodudou2 opened 1 year ago

guodudou2 commented 1 year ago

Hello,

I am interested to compare and plot novel transcripts identified by stringtie (guided). Will the novel transcripts be included in ballgown file? If not, what other tools can be used to visualize novel transcripts?

Thanks, Wendy