problem with python prepDE.py3 -i sample_lst.txt

gpertea / stringtie

Transcript assembly and quantification for RNA-Seq

MIT License

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problem with python prepDE.py3 -i sample_lst.txt #404

Closed danielpovedam closed 1 year ago

danielpovedam commented 1 year ago

Hi, I am using prepDE.py3 and I got this error: python prepDE.py3 -i sample_lst.txt Problem parsing file ./04_counts/STRG.F1.cov_refs.gtf at line: :['atg000086l_1', 'AUGUSTUS', 'transcript', '604659', '606419', '.', '-', '.', 'ID=Ccac_cleaned_g34.t1;CDS=604659:606419;CDSphase=0;geneID=Ccac_cleaned_g34;coverage=0.00\n']

could you help me to identify what the problem is. Many thanks

sample_lst.txt

STRG.F1.cov_refs.zip

danielpovedam commented 1 year ago

I sorry, my directory tree was wrong.