Feature missed CDS, start_codon and stop_codon

gpertea / stringtie

Transcript assembly and quantification for RNA-Seq

MIT License

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Feature missed CDS, start_codon and stop_codon #41

Closed Jinjie-Duan closed 8 years ago

Jinjie-Duan commented 8 years ago

The feature of my output gtf file from stringtie contains only "exon" and "transcript", no "CDS"," start_codon" and "stop_codon". Is that normal? Does anyone have this experience before?

gpertea commented 8 years ago

Yes, that's normal - StringTie is a RNA-Seq assembler, not a gene/ORF finder.