Getting error with StringTie

gpertea / stringtie

Transcript assembly and quantification for RNA-Seq

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Getting error with StringTie #444

Open nayan-bhowmik opened 2 months ago

nayan-bhowmik commented 2 months ago

Hello!

I am getting the following error for stringtie command: stringtie -o outputfile -G annotationfile bamfile "Error: no valid ID found for GFF record Aborted (core dumped)"

I am using the gtf file downloaded from the ncbi: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_002263795.3/

Any help would be highly appreciated!

Thanks, Nayan

nayan-bhowmik commented 2 months ago

I have tried with the gff version 3 file; now it is working.