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gpilab / framework

The GPI framework provides the canvas for graphically assembling algorithms.
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errors on starting GPI - residual root ownership? #2

Closed pefs44 closed 7 years ago

pefs44 commented 8 years ago

starting GPI, although the canvas and menu bar open, I get messages:

Thu May 5 08:28:50 2016 - gpi.loader:121 - ERROR - Traceback (most recent call last): File "/Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/loader.py", line 118, in loadMod py_compile.compile(fullpath, doraise=True) File "/Users/paul/gpi_stack/lib/python3.5/py_compile.py", line 143, in compile importlib._bootstrap_external._write_atomic(cfile, bytecode, mode) File "", line 106, in _write_atomic PermissionError: [Errno 13] Permission denied: '/Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/types/pycache/globjectlist_GPITYPE.cpython-35.pyc.4644736656'

FAILED:/Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/types/globjectlist_GPITYPE.py Thu May 5 08:28:50 2016 - gpi.loader:121 - ERROR - Traceback (most recent call last): File "/Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/loader.py", line 118, in loadMod py_compile.compile(fullpath, doraise=True) File "/Users/paul/gpi_stack/lib/python3.5/py_compile.py", line 143, in compile importlib._bootstrap_external._write_atomic(cfile, bytecode, mode) File "", line 106, in _write_atomic PermissionError: [Errno 13] Permission denied: '/Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/types/pycache/numpy_GPITYPE.cpython-35.pyc.4638085320'

FAILED:/Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/types/numpy_GPITYPE.py Thu May 5 08:28:50 2016 - gpi.loader:121 - ERROR - Traceback (most recent call last): File "/Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/loader.py", line 118, in loadMod py_compile.compile(fullpath, doraise=True) File "/Users/paul/gpi_stack/lib/python3.5/py_compile.py", line 143, in compile importlib._bootstrap_external._write_atomic(cfile, bytecode, mode) File "", line 106, in _write_atomic PermissionError: [Errno 13] Permission denied: '/Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/types/pycache/python_GPITYPE.cpython-35.pyc.4638086232'

FAILED:/Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/types/python_GPITYPE.py

ls -l shows: drwxr-xr-x 5 root admin 170 May 4 23:19 pycache its contents are also owned by root.

chowning pycache but not its contents, the error messages are eliminated.

something to check in the distributed versions?

Paul

aganders3 commented 8 years ago

Sorry for missing this issue - it must have slipped past while @nckz and I were at (or preparing for) ISMRM.

Can you check the ownership of your gpi_stack directory? What about the /Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/ directory?

The only way I can think this might happen is if you installed GPI as root (or using sudo to run the install script) or at some point ran GPI as root (or using sudo) or both.

pefs44 commented 8 years ago

Hi in /Users/pauldrwxr-xr-x 18 paul staff 612 May 3 00:52 gpi_stack in /Users/paul/gpi_stack/lib/python3.5/site-packages

drwxr-xr-x 52 paul staff 1768 May 3 00:52 gpi running as root or sudo almost certainly not. slipping in a command-line sudo during install might have happened - but I don't remember doing so. Paul

Date: Thu, 2 Jun 2016 14:20:44 -0700 From: notifications@github.com To: framework@noreply.github.com CC: pefs44@hotmail.com; author@noreply.github.com Subject: Re: [gpilab/framework] errors on starting GPI - residual root ownership? (#2)

Sorry for missing this issue - it must have slipped past while @nckz and I were at (or preparing for) ISMRM.

Can you check the ownership of your gpi_stack directory? What about the /Users/paul/gpi_stack/lib/python3.5/site-packages/gpi/ directory?

The only way I can think this might happen is if you installed GPI as root (or using sudo) or at some point ran GPI as root (or using sudo) or both.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

pefs44 commented 7 years ago

Hi Ashley,

I didn't figure out what was happening with the ownership, but things seemed to be working after a certain point, then vacation and

haven't managed to touch things again [☹]

Paul

From: Ashley Anderson notifications@github.com Sent: 21 September 2016 22:19 To: gpilab/framework Cc: pefs44; Author Subject: Re: [gpilab/framework] errors on starting GPI - residual root ownership? (#2)

Closed #2https://github.com/gpilab/framework/issues/2.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/gpilab/framework/issues/2#event-798024326, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ASRV9_HLm9nQcGB64nSkdaHv4uj6lmpIks5qsZ9zgaJpZM4IXzB5.