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gpu / JOCL

Java bindings for OpenCL
http://www.jocl.org
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Why is there no libJOCL_2_0_4-linux-arm64.so? #48

Open ashesfall opened 1 year ago

ashesfall commented 1 year ago

I've switched to arm64 to support Apple, and its awesome to see libJOCL_2_0_4-apple-arm64.dylib in the jar, but what about libJOCL_2_0_4-linux-arm64.so?

I need this to work on linux also, and I don't see why it wouldn't - save for this being missing.

gpu commented 1 year ago

Nobody provided it. I can not (easily or reasonably) build the binaries for all possible combinations of operating systems and architectures. You can compile the native library on your own, as described at https://github.com/gpu/JOCL#building-the-native-libraries , and put the native library into your project root directory (it should be picked up from there, usually).

If someone is willing to contribute pre-built binaries for other architectures, then they can be integrated into future releases as well. (There is no timeline for specific updates for the near future, but in doubt, I could create a Maven release with the additional library, if someone provided it)

ashesfall commented 1 year ago

I will try and build it and contribute it back. Thank you for providing aarch anyway that one was very useful.

ashesfall commented 1 year ago

I've deployed an arm64 VM and installed the relevant tools, I should be able to supply the lib back to the project this week.

@gpu what version of the JDK should I build it against?

CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
  Could NOT find JNI (missing: JAVA_AWT_LIBRARY JAVA_JVM_LIBRARY
  JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 JAVA_AWT_INCLUDE_PATH)
gpu commented 1 year ago

I don't know whether that makes any difference. I guess it's just OpenJDK? Maybe @blueberry can give a hint here.

blueberry commented 1 year ago

I don't know. I've never used arm64, nor do I have a computer with that architecture.

gpu commented 1 year ago

what version of the JDK should I build it against?

Do you have a JDK installed right now (and not only a JRE)?

(I think that CMake should be able to figure out these paths automatically, but that might not be the case here, depending on where/how exactly it was installed...)

ashesfall commented 1 year ago

@gpu @blueberry Its a fresh VM, I didn't want to have any chance of contamination for a library that other people may rely on.

I can install any jdk version really, even jdk 8 is available on arm64. The question is just about the java version that the other libraries were compiled against. If you used the header files from jdk 10, for example, for all the other libs - I would install jdk10. If it really doesn't matter, I will install jdk17.

ashesfall commented 1 year ago

And to be clear, I would be using openjdk for versions 10 or above, and oracle jdk for version 9 and below. But the header files are essentially part of the specification, I don't think the vendor of the jdk is relevant - only the version.

gpu commented 1 year ago

The version may be a relevant point here. Usually, in terms of compatibility, it's good to use "the lowest version that works". To be honest, I never thought about where and how the JDK version comes into play for JOCL (that's the good thing with Java - it usually "just works"...). But I'd like to avoid a situation where someone has Java 10, and JOCL bails out due to some dependency to a newer Java version. If it works with JDK 8 (which I'm still using, by the way), then it could/should be that.

ashesfall commented 1 year ago

I built it on arm using jdk 8.

[ec2-user@ip-172-31-54-246 ~]$ arch
aarch64
[ec2-user@ip-172-31-54-246 ~]$ cmake --build jocl-build
[  7%] Building CXX object JOCLCommon/CMakeFiles/JOCLCommon.dir/src/main/native/Logger.cpp.o
[ 15%] Building CXX object JOCLCommon/CMakeFiles/JOCLCommon.dir/src/main/native/CLJNIUtils.cpp.o
[ 23%] Building CXX object JOCLCommon/CMakeFiles/JOCLCommon.dir/src/main/native/JNIUtils.cpp.o
[ 30%] Building CXX object JOCLCommon/CMakeFiles/JOCLCommon.dir/src/main/native/PointerUtils.cpp.o
[ 38%] Building CXX object JOCLCommon/CMakeFiles/JOCLCommon.dir/src/main/native/ConversionsCL.cpp.o
[ 46%] Linking CXX static library libJOCLCommon.a
[ 46%] Built target JOCLCommon
[ 53%] Building CXX object CMakeFiles/JOCL_2_0_4-linux-x86_64.dir/src/main/native/JOCL.cpp.o
[ 61%] Building CXX object CMakeFiles/JOCL_2_0_4-linux-x86_64.dir/src/main/native/CLFunctions.cpp.o
[ 69%] Building CXX object CMakeFiles/JOCL_2_0_4-linux-x86_64.dir/src/main/native/FunctionPointerUtils.cpp.o
[ 76%] Building CXX object CMakeFiles/JOCL_2_0_4-linux-x86_64.dir/src/main/native/FunctionPointerUtils_Linux.cpp.o
[ 84%] Building CXX object CMakeFiles/JOCL_2_0_4-linux-x86_64.dir/src/main/native/FunctionPointerUtils_Win.cpp.o
[ 92%] Building CXX object CMakeFiles/JOCL_2_0_4-linux-x86_64.dir/src/main/native/Sizeof.cpp.o
[100%] Linking CXX shared library /home/ec2-user/JOCL/nativeLibraries/libJOCL_2_0_4-linux-x86_64.so
[100%] Built target JOCL_2_0_4-linux-x86_64

@gpu @blueberry but for some reason its labeled as x86_64. is this a known issue?

[ec2-user@ip-172-31-54-246 ~]$ objdump -f /home/ec2-user/JOCL/nativeLibraries/libJOCL_2_0_4-linux-x86_64.so

/home/ec2-user/JOCL/nativeLibraries/libJOCL_2_0_4-linux-x86_64.so:     file format elf64-littleaarch64
architecture: aarch64, flags 0x00000150:
HAS_SYMS, DYNAMIC, D_PAGED
start address 0x0000000000000000
gpu commented 1 year ago

The "x86_64" part is only part of the file name, used for disambiguating (the specific combination of Linux+Arm is not yet covered at https://github.com/gpu/JOCL/blob/fefa66d49dfefddde0f7f99ced4e3329e376cba8/CMakeLists.txt#L44 )

So it should be OK to just rename that file. It would be important to know what

String osArch = System.getProperty("os.arch");

returns on such a system, to make sure that the name matches what is computed at https://github.com/gpu/JOCL/blob/fefa66d49dfefddde0f7f99ced4e3329e376cba8/src/main/java/org/jocl/LibUtils.java#L580

ashesfall commented 1 year ago

It emits the same value as shown in my response above:

[ec2-user@ip-172-31-54-246 ~]$ cat Test.java
public class Test {
    public static void main(String args[]) {
        System.out.println(System.getProperty("os.arch"));
    }
}

[ec2-user@ip-172-31-54-246 ~]$ java Test
aarch64

I assume I can fork the repo where this is located, and open a pull request? Where are the native libs located?

The correct name should be:

libJOCL_2_0_4-linux-arm64.so

is that right?

ashesfall commented 1 year ago

I have uploaded the library to dropbox so that you can include it in a future release if you are able:

https://www.dropbox.com/s/fzm9mc83ynfchs1/libJOCL_2_0_4-linux-arm64.so?dl=0

gpu commented 1 year ago

Thanks @ashesfall - there wasn't a release planned, but I'll schedule some time for an update, and integrade the new binary with that.

ashesfall commented 1 year ago

@gpu thank you. this repository does not appear to be participating in github sponsors. If there is another way to support the project let me know.

aspecialkey commented 1 year ago

@ashesfall thanks for your work!

I have tried using your lib but I get this error: java.lang.UnsatisfiedLinkError: /usr/lib/libJOCL_2_0_4-linux-arm64.so: /lib/aarch64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by /usr/lib/libJOCL_2_0_4-linux-arm64.so)

I'm on ubuntu 20.04 and tried to update but I only get version 2.31

sudo apt install libc6
Paketlisten werden gelesen... Fertig
Abhängigkeitsbaum wird aufgebaut.       
Statusinformationen werden eingelesen.... Fertig
libc6 ist schon die neueste Version (2.31-0ubuntu9.9).

I have tried to build by myself without success with these build-instructions

grafik

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Can you give me a hint how to build it correctly?

ashesfall commented 1 year ago

@aspecialkey Is java working at all on your machine? if so, which version of java? Your systems are somewhat consistent with a setup wherein java is not working at all.

aspecialkey commented 1 year ago 
jetson@jetson:~$ java -version
openjdk version "17.0.6" 2023-01-17
OpenJDK Runtime Environment Temurin-17.0.6+10 (build 17.0.6+10)
OpenJDK 64-Bit Server VM Temurin-17.0.6+10 (build 17.0.6+10, mixed mode, sharing)
aspecialkey commented 1 year ago

sudo apt-get install -y default-jdk

Solved the problem for me. Thanks for the advice.

gpu commented 1 year ago

this repository does not appear to be participating in github sponsors. If there is another way to support the project let me know.

Nobody is willing to pay for open source software. (There are reasons why there hasn't been sooo much active development around JOCL for a while now, e.g. there are no updates to support newer OpenCL versions...)

@ashesfall and @aspecialkey

... `GLIBC_2.34' not found ...

The problem of GLIBC compatibility also appeared in one of my other projects. In general, it would be good to have the binaries compiled with the lowest GLIBC version that works. Otherwise, people might have GLIBC version 2.39999999 and receive an error message because the binary was built against 2.34.

So @aspecialkey If you managed to compile the binary, then maybe you could post it here. Then @ashesfall could try it out (and it should almost certainly work), and maybe we can create a new JOCL release that runs on a broader range of target OSes (i.e. ones with older GLIBC versions)

ashesfall commented 1 year ago

@gpu I'm pretty much committed to a version of GLIBC via the OS. Do you have a recommendation for a linux distro and version that would have the "lowest" usable GLIBC with it?

gpu commented 1 year ago

I'm not deeply familiar with some aspects of developing on Linux that may be relevant here. And I don't know what the "lowest" version is that will work, but ... I think that nothing relevant has happened here in the past ~8 years, so I think it roughly depends on the question: Which is the lowest Linux/GLIBC version on which an OpenCL 2.0 SDK can be installed?

But @ashesfall you probably don't want to downgrade your OS to an ancient version, just to compile this lib.

Possible solutions could be:

aspecialkey commented 1 year ago

My library I have compiled on Ubuntu LTS 20.04 against Java 11. Next week I could recompile against Java 8 on Ubuntu LTS 18.04 if I remember correctly GLIBC version 2.27. That would bring greater compatibility I think.

or if @ashesfall is faster, of course you are welcome to do that too ;)

ashesfall commented 1 year ago

@gpu I'm using cloud VMs, I don't even own a physical ARM device that isn't made by Apple

@aspecialkey I'm unlikely to get to it until early next week, but I will eventually do it as my own library depends on this one and really needs to run on Amazon's ARM machines.

gpu commented 1 year ago

@ashesfall I considered setting up some build infrastructure (basically playing with some GitHub action for building on "all OSes and architectures", and trying to grab the resulting native libraries). This might be "easy" in a technical sense, like just adding the right buildMyStuff.yml with the proper runs-on: ubuntu-latest/windows/whatever lines in the right place. But I'll probably not have the time to do this soon (even if it could save a tremendous amount of time in the long run).

So... if @ashesfall or @aspecialkey provides a library (and maybe the other one checks whether it "also works on other machines"), I can schedule a version 2.0.5 with the additional library.

ashesfall commented 1 year ago

@gpu it would be pretty easy to do this with github actions, I could probably help set it up. In the meantime though I'm just going to rebuild the library on an older OS (older glibc) for wider compatibility. I didn't find the time to do it over last weekend, so it probably wont be until this weekend that I find the time.

gpu commented 1 year ago

I could probably help set it up.

That would be cool. Setting up the action itself would probably be relatively easy. What I currently don't know: This "action" will run some command-line CMake build, and generate some ...JOCL...so file somewhere. And I need some way to access this, to collect all the binaries and put them into a JAR. (I don't see any "build artifacts" in the GitHub CIs that I know, and maybe there's an "easy" option to make the results available, but I'd have to investigate this)

ashesfall commented 1 year ago

@gpu I finally got around to building it with GLIBC 2.27 for greater compatibility, and you can download it here https://www.dropbox.com/s/ojiovlc6yi7qz3g/libJOCL_2_0_4-linux-arm64.so?dl=0

To do this, I used a method that would be directly portable to github actions to see how straightforward that would be. I created this Dockerfile:

FROM ubuntu:18.04

WORKDIR /
COPY JOCL /JOCL
COPY JOCLCommon /JOCLCommon

RUN apt-get update
RUN apt-get install -y cmake
RUN apt-get install -y gfortran g++
RUN apt-get install -y openjdk-8-jdk
RUN apt-get install -y libglu1-mesa-dev freeglut3-dev mesa-common-dev

RUN JAVA_HOME=/usr/lib/jvm/java-8-openjdk-arm64/ cmake -S JOCL -Bbuild
RUN cmake --build build

ENTRYPOINT sleep 1h

Then I run:

docker build . -t jocl
docker run jocl&
docker cp <container>:/JOCL/nativeLibraries/libJOCL_2_0_4-linux-x86_64.so ./libJOCL_2_0_4-linux-x86_64.so

To retrieve the library. If I find some time during May to do it, I'll create a github actions configuration that does the same thing and submit a merge request for the repo.

gpu commented 1 year ago

Thanks @ashesfall . I'll schedule a new release, and try to find some time to look at the docker approach. (When I previously compiled binaries in VMs, I usually hesitated to release them, because I couldn't really test them, but at some point, I just have to assume that (and create a patch verson if necessary...))

ashesfall commented 1 year ago

@gpu yea, the community ultimately has to validate to be completely sure nothing is broken, but a test suite can be created to run in the docker container as well. Since I believe the custom github runners (which I think you would need for some of the arch variants) are still in beta, you may want to apply to join the beta now if you plan on doing something like this eventually.

gpu commented 1 year ago

However, JOCL 2.0.5 should be on its way into Maven Central. If someone encounters a problem ... ... .... ... oh, well, at least let me know.

gpu commented 1 year ago

In any case: Thanks @ashesfall for your support here!

ashesfall commented 1 year ago

@gpu no problem. this project is critical to my own (https://github.com/almostrealism/common/blob/master/README.md)

gpu commented 1 year ago

That project looks interesting - but huge. I only skimmed over some parts of it (and could try to allocate more time for wrapping my head around all that, but ... there are too many projects out there for which I would do that, iff I had infinite time...). The idea of generalizing certain common mathematical operations and adding convenient abstraction layers (preferably ones that can transparently be executed on the CPU or GPU) is not entirely new, but I don't have an overview of all the libraries that already exist out there.

Some bragging ahead....

During my quick scrolling, I saw public class Tensor in the algebra package (and was suprised that this is a class, and uses raw types internally...). With one of my other GitHub identities, I once created https://github.com/javagl/ND , which is structured in a way that could allow adding certain operations to be implemented on the GPU: It is based on primitive arrays, which can more easily be mapped to GPU resources, but still offers some convenience functions for iterating over the ND-arrays (in lexicographical or colexicographical order) or obtaining the elements as a primitive Java stream (like DoubleStream), that already does offer parallelism.

Even just having a bunch of predefined kernels to operate on vector data can be useful (similar to https://github.com/jcuda/jcuda-vec ), but this could be generalized by offering certain structures in a "CPU form" and a "GPU form" (similar to https://github.com/jcuda/jcuda-matrix-utils). (Yes, that's yet another one of my identities).

One goal of such abstractions could be to apply generic operations on bulk data, like in pseucodode....

// compute sqrt(sin(x)+0.5) for all elements of an ND-array/tensor:
result = input
    .apply(sin())
    .apply(add(0.5))
    .apply(sqrt());

The obvious next generalization would be to support ... arbitrary operations there. This might be similar to what you did in the https://github.com/almostrealism/common/tree/master/code package. Applied to the pseudocode, this would be

// compute sqrt(sin(x)+0.5) for all elements of an ND-array/tensor:
result = input
    .apply(compute("sqrt(sin(x)+0.5)");

with some basic expression parser that reads that expression string. And... this is not even too difficult: There are a bunch of parsers out there that can generate an AST, and that AST can be converted into OpenCL code, and that can be compiled into a kernel at runtime. I did this once, for Groovy, at http://jocl.org/GroovyGPU/ - but it would also be possible for Java. That's essentially what https://github.com/Syncleus/aparapi is doing (even though that project went through quite some hiccups in the past...)

When this is rather supposed to run on the CPU, I have done some work there as well: In my (private!) project https://github.com/javagl/Data there already are packages for generic data set representations, general I/O (using Weka, JSON, CSV, ...), general matrix operations, and a package called functional, with fancy stuff like

    /**
     * Compute the object from the given collection for which the result of
     * applying the given function to the object and the given object
     * is minimal.
     *
     * @param <T> The type of the objects
     * @param <U> The type of the object
     *
     * @param objects The objects
     * @param object The object
     * @param function The function
     * @return The {@link ObjectWithDouble} containing the object and
     * the function value. If the given collection is empty, then the object
     * will be <code>null</code> and the value will be
     * <code>POSITIVE_INFINITY</code>
     */
    public static <T, U> ObjectWithDouble<T> computeMin(
        Collection<? extends T> objects, U object,
        ToDoubleBiFunction<? super T, ? super U> function)
    {
        ...

(e.g. for computing an object that is closest to another object, based on some arbitrary distance function). All that internally takes care of the efficient, parallel-stream based execution of all these functions.

And finally... I've seen that swing package there, and I'm a "Swing fan" (https://github.com/javagl/SwingTasks, https://github.com/javagl/CommonUI , and many more...).

But again: There are too many things too look at....

ashesfall commented 1 year ago

@gpu Your javagl space looks interesting, do you have working demos of hardware accelerated 3D from Java? I was using JOGL for the UI in my audio generation (built on top of the library I sent) app, but I ended up switching to the much less flexible (but more reliable on different systems) built-in JavaFX 3d support. I'd like to switch back, but I haven't kept up with where JOGL is going (if anywhere).

As for Tensor: it, like most of the library, is not hardware accelerated. It can support ND collections of arbitrary objects, but it must be converted to PackedCollection for use with hardware acceleration using Tensor::pack. I wouldn't recommend using it for large data, for that you should allocate PackedCollection directly with the size you need using new PackedCollection(shape(10, 100, 100, 3), 1) for 10 RGB images that are 100 by 100, for example. The last 1 after specifying the shape indicates that you want kernel operations to run on the first axis of this collection. IE, all kernels will run with a global ID that ranges between 0 and 9. You can change this axis whenever you want, to traverse at different levels of granularity.

You are right that the code module provides the general building blocks for generating kernel code, while the hardware module provides a system for compiling it with JOCL to invoke on PackedCollection instances of any shape. hardware also provides support for generating raw C code as well, so you can use the app to generate a fully functioning native library of commonly used operations if you chose to. Instead I usually use it to generate massive kernel programs that contain all the operations I want to perform for a specific use case, and then invoke the single operation on thousands of elements at once.

I'm mainly using these tools for generating audio, describing the space of possible music arrangements using a data structure called Genome found in the heredity module. Genomes can be combined, and so the system uses a stochastic method to explore the space of possible arrangements, selecting and combining those that are desirable. If you're interested in that kind of stuff I'll invite you to the project, but I'll make it public later this year anyway. There's also a desktop application, mainly for music producers, that has a small community of about 6 users so far. It's only available for Mac OS at the moment, and is not yet migrated to arm (hence my interest in arm support on JOCL, though it does work on mac I'm trying to standardize on arm for even the components of it that run in the cloud as its cheaper).

Thanks for your reply. Sorry it took me so long to respond.