search

graehl / pygr

Automatically exported from code.google.com/p/pygr
0 stars 0 forks source link

missing file (pygr/seqfmt.c: No such file or directory) from latest clone? #124

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. get latest from git (I used: git clone git://github.com/cjlee112/pygr.git)
2. cd pygr
3. sudo python setup.py install

What is the expected output? What do you see instead?
relevant output:
copying pygr/apps/splicegraph.py ->
build/lib.macosx-10.6-universal-2.6/pygr/apps
running build_ext
building 'pygr.seqfmt' extension
creating build/temp.macosx-10.6-universal-2.6
creating build/temp.macosx-10.6-universal-2.6/pygr
gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -Os
-Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch ppc -arch x86_64
-pipe
-I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c
pygr/seqfmt.c -o build/temp.macosx-10.6-universal-2.6/pygr/seqfmt.o
i686-apple-darwin10-gcc-4.2.1: pygr/seqfmt.c: No such file or directory
i686-apple-darwin10-gcc-4.2.1: no input files
powerpc-apple-darwin10-gcc-4.2.1: pygr/seqfmt.c: No such file or directory
powerpc-apple-darwin10-gcc-4.2.1: no input files
i686-apple-darwin10-gcc-4.2.1: pygr/seqfmt.c: No such file or directory
i686-apple-darwin10-gcc-4.2.1: no input files
lipo: can't figure out the architecture type of: /var/tmp//ccbA5x5D.out
error: command 'gcc-4.2' failed with exit status 1

What version of the product are you using? On what operating system?
Latest from git. Happens on Mac OSX 6.1, Linux 

Please provide any additional information below.
Thats about it. Missing file.

Original issue reported on code.google.com by roc...@gmail.com on 4 Nov 2009 at 9:49

GoogleCodeExporter commented 9 years ago 
Hi, rochak, do you have Pyrex installed?

http://www.cosc.canterbury.ac.nz/greg.ewing/python/Pyrex/

You need Pyrex to build out of the source tree.  For our source downloads
we include the intermediate C files (produced by Pyrex).

Original comment by the.good...@gmail.com on 5 Nov 2009 at 1:37

GoogleCodeExporter commented 9 years ago 
Marking as Invalid.

Original comment by the.good...@gmail.com on 29 Nov 2009 at 4:53