What steps will reproduce the problem?
1. Build pygr-doc using Fink .info file
2. See error output
What is the expected output? What do you see instead?
This is the error output:
mkdir -p html_new/epydoc
epydoc --docformat restructuredtext ../pygr -o html_new/epydoc
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/translationDB.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named seqfmt (line 1)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/seqdb.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named seqfmt (line 154)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/xnestedlist.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named cnestedlist (line 1)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/blast.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named seqfmt (line 8)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/apps/__init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named MySQLdb (line 1)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/apps/leelabdb.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named MySQLdb (line 1)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/apps/maf2nclist.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named MySQLdb (line 1)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/apps/seqref.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named MySQLdb (line 1)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/apps/splicegraph.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named MySQLdb (line 1)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In
/sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/apps/catalog_downloads.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named MySQLdb (line 1)
|
+-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
| In /sw32/build.build/pygr-doc-0.8.1-1/pygr-0.8.1/pygr/apps/maf2VSgraph.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named MySQLdb (line 1)
|
Warning: No information available for pygr.xnestedlist.NLMSAClient's base
cnestedlist.NLMSA
Warning: No information available for pygr.xnestedlist.NLMSAServer's base
cnestedlist.NLMSA
00:04 Progress: 00:10
28% [===================================================--------------------------------------------------------------------------------------------------------------------------------]
Parsing docstrings: basestring
UNEXPECTED ERROR:
'Text' object has no attribute 'data'
Use --debug to see trace information.
make: *** [epydocs] Error 3
What version of the product are you using? On what operating system?
0.8.2, but also happens on 0.8.1. Tested on OS X 10.6 under both 32 and 64bit
installs.
Please provide any additional information below.
See
<http://sourceforge.net/tracker/?func=detail&atid=414256&aid=3139092&group_id=17
203> for the Fink tracker entry for this.
Original issue reported on code.google.com by niederst...@gmail.com on 19 Jul 2012 at 8:05
Original issue reported on code.google.com by
niederst...@gmail.comon 19 Jul 2012 at 8:05