Closed neb9 closed 7 years ago
For reference, the following work (on the July 21 commit, using compress(maskProtein())):
compress(maskProtein())
1a7s.pdb 1lt6.pdb 2crt.pdb 3m3r.pdb 1ae5.pdb 1lta.pdb 2dcv.pdb 3m4d.pdb 1ah7.pdb 1ltb.pdb 2dcw.pdb 3m4e.pdb 1am7.pdb 1ltg.pdb 2ddr.pdb 3o44.pdb 1ao6.pdb 1lti.pdb 2dds.pdb 3psm.pdb 1aok.pdb 1lts.pdb 2ddt.pdb 3q76.pdb 1aro.pdb 1ltt.pdb 2dtb.pdb 3q77.pdb 1au8.pdb 1m3i.pdb 2e2f.pdb 3roh.pdb 1ayj.pdb 1m3j.pdb 2ffz.pdb 3sqj.pdb 1b0f.pdb 1md2.pdb 2fgn.pdb 3tdl.pdb 1bah.pdb 1mm0.pdb 2ga4.pdb 3uiv.pdb 1bj5.pdb 1n5u.pdb 2gj0.pdb 3ujo.pdb 1bk8.pdb 1o71.pdb 2gl1.pdb 3ujq.pdb 1bke.pdb 1o72.pdb 2huc.pdb 3uk9.pdb 1bm0.pdb 1o9x.pdb 2i0w.pdb 3ul2.pdb 1bos.pdb 1oba.pdb 2i2z.pdb 3v08.pdb 1brz.pdb 1odb.pdb 2i30.pdb 3vts.pdb 1c01.pdb 1ozz.pdb 2ixu.pdb 3zwg.pdb 1c4q.pdb 1p00.pdb 2ixv.pdb 3zwj.pdb 1ca1.pdb 1p0a.pdb 2j8g.pdb 3zx7.pdb 1cfe.pdb 1p5x.pdb 2k38.pdb 3zxd.pdb 1cgh.pdb 1p6d.pdb 2kam.pdb 3zxg.pdb 1chp.pdb 1p6e.pdb 2kcg.pdb 4dwx.pdb 1chq.pdb 1p9z.pdb 2kgq.pdb 4dyg.pdb 1chv.pdb 1ppf.pdb 2knj.pdb 4fb9.pdb 1cix.pdb 1ppg.pdb 2knm.pdb 4fbb.pdb 1cqf.pdb 1pvl.pdb 2knn.pdb 4fbc.pdb 1cre.pdb 1pzi.pdb 2ks4.pdb 4fbh.pdb 1crf.pdb 1q3j.pdb 2ksg.pdb 4g03.pdb 1ct1.pdb 1qm6.pdb 2kuk.pdb 4g04.pdb 1cxn.pdb 1qmd.pdb 2kyq.pdb 4h56.pdb 1cxo.pdb 1qnu.pdb 2l2b.pdb 4he7.pdb 1cz6.pdb 1qoh.pdb 2l38.pdb 4hgk.pdb 1czg.pdb 1qoy.pdb 2lb7.pdb 4iw2.pdb 1czw.pdb 1r4p.pdb 2lj7.pdb 4iyc.pdb 1d1i.pdb 1r4q.pdb 2lkf.pdb 4iyt.pdb 1d1k.pdb 1rcv.pdb 2lr3.pdb 4izl.pdb 1d9u.pdb 1reo.pdb 2ly5.pdb 4j0o.pdb 1djr.pdb 1rf2.pdb 2ly6.pdb 4jox.pdb 1dkc.pdb 1rgb.pdb 2m8b.pdb 4jta.pdb 1dm0.pdb 1s5b.pdb 2m9g.pdb 4jtc.pdb 1dtc.pdb 1s5c.pdb 2mcw.pdb 4jtd.pdb 1du5.pdb 1s5d.pdb 2mcx.pdb 4k2c.pdb 1e78.pdb 1s5e.pdb 2mp9.pdb 4k71.pdb 1e7a.pdb 1s5f.pdb 2mxz.pdb 4l8u.pdb 1e7b.pdb 1siy.pdb 2mz0.pdb 4l9k.pdb 1e7c.pdb 1t32.pdb 2n0o.pdb 4l9q.pdb 1e7e.pdb 1t5r.pdb 2n2q.pdb 4la0.pdb 1e7f.pdb 1tdk.pdb 2n2r.pdb 4lb2.pdb 1e7g.pdb 1tdn.pdb 2n2z.pdb 4lb9.pdb 1e7h.pdb 1tdo.pdb 2n66.pdb 4m1u.pdb 1e7i.pdb 1tf0.pdb 2n81.pdb 4m3c.pdb 1e8a.pdb 1tgx.pdb 2nrj.pdb 4n0f.pdb 1eef.pdb 1tzq.pdb 2qk7.pdb 4n0u.pdb 1efi.pdb 1ueo.pdb 2rg3.pdb 4oeb.pdb 1fd7.pdb 1ug4.pdb 2uyr.pdb 4om4.pdb 1fgb.pdb 1uor.pdb 2v9u.pdb 4om5.pdb 1fy1.pdb 1ut3.pdb 2vdb.pdb 4or0.pdb 1fy3.pdb 1uun.pdb 2vue.pdb 4p1x.pdb 1g8z.pdb 1xez.pdb 2vuf.pdb 4p1y.pdb 1gni.pdb 1xjt.pdb 2wcd.pdb 4p24.pdb 1gnj.pdb 1xju.pdb 2wcf.pdb 4p2c.pdb 1gps.pdb 1xt3.pdb 2wxt.pdb 4s1y.pdb 1gpt.pdb 1xtc.pdb 2wxu.pdb 4tsy.pdb 1gqm.pdb 1xv3.pdb 2wy6.pdb 4tw1.pdb 1gwy.pdb 1xx1.pdb 2xrq.pdb 4u6v.pdb 1gyg.pdb 1z99.pdb 2xsi.pdb 4ull.pdb 1h09.pdb 1zrv.pdb 2xvq.pdb 4wvm.pdb 1h0j.pdb 1zrw.pdb 2xvu.pdb 4xre.pdb 1h1b.pdb 1zrx.pdb 2xvv.pdb 4yhd.pdb 1h5o.pdb 1zwx.pdb 2xvw.pdb 4z69.pdb 1h9z.pdb 2a9h.pdb 2xw0.pdb 4zgh.pdb 1ha2.pdb 2ap7.pdb 2xw1.pdb 4zpu.pdb 1hk1.pdb 2ap8.pdb 2ydf.pdb 5a09.pdb 1hk2.pdb 2bhi.pdb 2ygt.pdb 5a0a.pdb 1hk3.pdb 2bos.pdb 2ymk.pdb 5a0b.pdb 1hk4.pdb 2brz.pdb 2ymw.pdb 5a0c.pdb 1hk5.pdb 2bx8.pdb 2z7f.pdb 5a8x.pdb 1hne.pdb 2bxa.pdb 3a2e.pdb 5a8y.pdb 1htl.pdb 2bxb.pdb 3a73.pdb 5a8z.pdb 1i02.pdb 2bxc.pdb 3anz.pdb 5aod.pdb 1i2u.pdb 2bxd.pdb 3b07.pdb 5aoe.pdb 1i2v.pdb 2bxe.pdb 3b9l.pdb 5aof.pdb 1iaz.pdb 2bxf.pdb 3b9m.pdb 5dqf.pdb 1iyc.pdb 2bxg.pdb 3bkh.pdb 5ec5.pdb 1jkz.pdb 2bxh.pdb 3bkv.pdb 5fuo.pdb 1jlt.pdb 2bxi.pdb 3chb.pdb 5gaq.pdb 1jqy.pdb 2bxk.pdb 3cx9.pdb 5hoz.pdb 1jr0.pdb 2bxl.pdb 3d3d.pdb 5ifo.pdb 1kbs.pdb 2bxm.pdb 3hc7.pdb 5iih.pdb 1kbt.pdb 2bxn.pdb 3hde.pdb 5iiu.pdb 1kd6.pdb 2bxo.pdb 3i5v.pdb 5iix.pdb 1kho.pdb 2bxp.pdb 3ipv.pdb 5ij5.pdb 1kyn.pdb 2bxq.pdb 3jqz.pdb 5ije.pdb 1lba.pdb 2c5c.pdb 3jry.pdb 5ijf.pdb 1lkf.pdb 2cdx.pdb 3lim.pdb 5k59.pdb 1lt3.pdb 2chb.pdb 3lkf.pdb 7ahl.pdb 1lt4.pdb 2crd.pdb 3lu7.pdb 8tfv.pdb 1lt5.pdb 2crs.pdb 3m2l.pdb
The following do NOT work:
1c48.pdb 3rlg.pdb 4gv5.pdb 4tsp.pdb 1p9g.pdb 3v03.pdb 4i0n.pdb 4tsq.pdb 1rd9.pdb 3v09.pdb 4idj.pdb 4wdc.pdb 1rdp.pdb 3vwi.pdb 4iw1.pdb 4whn.pdb 2anv.pdb 3w9p.pdb 4iya.pdb 4wvp.pdb 2anx.pdb 3weu.pdb 4j0l.pdb 4wx3.pdb 2f9r.pdb 3wev.pdb 4j2v.pdb 4wx5.pdb 2j8f.pdb 3wmu.pdb 4jk4.pdb 4zbq.pdb 2wc8.pdb 3wmv.pdb 4nzl.pdb 4zbr.pdb 2wcb.pdb 4bct.pdb 4ot2.pdb 5abw.pdb 2wce.pdb 4e99.pdb 4pho.pdb 5bpg.pdb 2xrs.pdb 4emx.pdb 4phq.pdb 5cr6.pdb 2xsc.pdb 4f5s.pdb 4po0.pdb 5dby.pdb 3a57.pdb 4f5t.pdb 4q7g.pdb 5elc.pdb 3hdf.pdb 4f5u.pdb 4rw3.pdb 5ele.pdb 3kve.pdb 4f5v.pdb 4rw5.pdb 5elf.pdb 3lu6.pdb 4fba.pdb 4tsl.pdb 5id7.pdb 3lu8.pdb 4fzm.pdb 4tsn.pdb 5id9.pdb 3mxg.pdb 4fzn.pdb 4tso.pdb
Some of this information may be useful for tests & debugging.
All trouble-makers tested in DSSP.py TestLong and, with the new output parsing, there is no problem any longer.
For reference, the following work (on the July 21 commit, using
compress(maskProtein())
):The following do NOT work:
Some of this information may be useful for tests & debugging.