graph-genome / component_segmentation

Read in ODGI Bin output and identify co-linear components
Apache License 2.0
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optimize memory consumption #23

Open subwaystation opened 4 years ago

6br commented 4 years ago

When I run the this command with public sequence data from here https://workbench.lugli.arvadosapi.com/collections/lugli-4zz18-z513nlpqm03hpca/,

docker run -ti --rm --publish=3000:3000 --volume=`pwd`:/usr/src/app/data pipeline data/covid_data.gfa -c 10000

on https://github.com/mandosoft/pipeline (supporting on multi-zoom level support on component_segmentation).

It requires more than 16Gb for running all data and my laptop hangs up.