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graph-genome / component_segmentation

Read in ODGI Bin output and identify co-linear components
Apache License 2.0
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Refactor segment_matrix to use numpy/pandas data structures #30

Closed lomereiter closed 4 years ago

lomereiter commented 4 years ago

Python sets and lists introduce performance overhead

lomereiter commented 4 years ago

^ working on this currently

subwaystation commented 4 years ago

This was solved in a previous PR @lomereiter, right?

lomereiter commented 4 years ago

That's right, closed via https://github.com/graph-genome/component_segmentation/pull/31