Roadmap: Integrate HaploBlocker into Database objects

graph-genome / graph_summarization

Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.

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Roadmap: Integrate HaploBlocker into Database objects #23

Open josiahseaman opened 5 years ago

josiahseaman commented 5 years ago

Followup #19. https://docs.google.com/document/d/1o_IWThHWK4qyyXk3-X4rZ2KJNGTbf-pPCRhzVmnQ1Xg/edit# Much of haplonetwork.py needs to be rewritten to use Graph.models objects. Strand support could come at the same time or as a separate step.

Haplonetwork.py should use Graph.Node.

upstream/downstream compared to Paths
Should allow copy number variation in a Node to work inside Haploblocker

What does downstream mean in a graph context?