Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.
Currently, we have a working Database that supports ZoomLevels and we have a HaploBlocker algorithm that could produce ZoomLevels. However, the HaploBlocker implementation doesn't use the same objects and it hasn't been tested on non-linear graphs yet.
[ ] Object references changed
[ ] Object construction updated to NodeTraversal.objects.create()
[ ] Iterating over "all nodes" handled in a reasonable consistent order
[ ] Testing for non-linear test cases where summarization could trip over itself.
Currently, we have a working Database that supports ZoomLevels and we have a HaploBlocker algorithm that could produce ZoomLevels. However, the HaploBlocker implementation doesn't use the same objects and it hasn't been tested on non-linear graphs yet.