Database import should discard orphan nodes.

graph-genome / graph_summarization

Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.

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Database import should discard orphan nodes. #28

Open subwaystation opened 5 years ago

subwaystation commented 5 years ago

.vg -> .rdf also includes nodes through which not any path goes! As we do not visualize such nodes, we should get rid of them. odgi my be able to do that for us.

josiahseaman commented 5 years ago

Use Graph.Node.validate() it checks for Orphans. 💃