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graph-genome / graph_summarization

Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.
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#4: Add DAGify method for linearizing the order of nodes #9

Closed 6br closed 5 years ago

6br commented 5 years ago

Issue: #13

6br commented 5 years ago

This pull request implemented a dagify method for paths from GFA. The slices are computed by computing longest common subsequences between paths. In addition, I added several test cases for simple cases and duplication.

josiahseaman commented 5 years ago

Thank you, I will take a look at this in my morning.

On Thu, Jul 18, 2019 at 1:01 PM Toshiyuki Yokoyama notifications@github.com wrote:

This pull request implemented a dagify method for paths from GFA. The slices are computed by computing longest common subsequences between paths. In addition, I added several test cases for simple cases and duplication.

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