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grbot
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varcall
Nextflow scripts for doing variant calling on human samples
MIT License
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Update README.md
#48
grbot
closed
1 year ago
0
DSL2-Modules.modules.align
#47
Thandeka325
closed
1 year ago
4
Mitochondrial variant calling pipeline missing a step
#46
Rohit-Satyam
opened
1 year ago
1
combine-lanes improvement
#45
melnel000
closed
1 year ago
3
Exome
#44
grbot
closed
2 years ago
0
Pull requests?
#43
cjfields
opened
2 years ago
2
Staging problem using singularity with combine-gvcfs
#42
shaze
closed
1 year ago
3
val(bam_file) -> file(bam_file)
#41
shaze
closed
2 years ago
1
Merge refimpute
#40
grbot
closed
3 years ago
0
Validate VCFs
#39
grbot
closed
4 years ago
0
Gvcf md5sum
#38
grbot
closed
4 years ago
0
Gvcf md5sum
#37
grbot
closed
4 years ago
0
Get dev up to date with master
#36
grbot
closed
4 years ago
0
Update main.nf
#35
melnel000
closed
4 years ago
1
GenotypeGVCFs on intervals
#34
grbot
closed
4 years ago
0
Dev
#33
grbot
closed
4 years ago
0
Merge dev into master
#32
grbot
closed
4 years ago
0
Adding samtools quickcheck on BAMS/CRAMs
#31
grbot
closed
4 years ago
0
Update main.nf
#30
melnel000
closed
4 years ago
1
Added b38 part for combineGVCF
#29
grbot
closed
4 years ago
0
Run GenomicsDBImport in parallel without needing to specify import DB
#28
grbot
closed
4 years ago
0
Adding validate gVCFs
#27
grbot
closed
4 years ago
0
Update nextflow.config.NA12878.b38
#26
melnel000
closed
4 years ago
0
Still sorting out DB naming
#25
grbot
closed
4 years ago
0
Still sorting out DB naming
#24
grbot
closed
4 years ago
0
Added split
#23
grbot
closed
4 years ago
0
Dev
#22
grbot
closed
4 years ago
0
Fixed label so correct container are used
#21
grbot
closed
4 years ago
0
VCF/gVCF indexing pipeline
#20
grbot
closed
4 years ago
0
Fixing error in config file
#19
grbot
closed
4 years ago
0
Fixed naming
#18
grbot
closed
4 years ago
0
Comment out print of sample info
#17
grbot
closed
4 years ago
0
Changed from VCF to gVCF
#16
grbot
closed
4 years ago
0
Update dev with master
#15
grbot
closed
4 years ago
0
CRAM to BAM pipeline
#14
grbot
closed
4 years ago
0
Now caches singularity images to user's home dir …
#13
grbot
closed
5 years ago
0
Typo on low coverage loop
#12
grbot
closed
5 years ago
0
Updated README.md
#11
grbot
closed
5 years ago
0
Updated README.md
#10
grbot
closed
5 years ago
0
Updated README.md
#9
grbot
closed
5 years ago
0
Made three more pipelines ready for Ilifu
#8
grbot
closed
5 years ago
0
Update README.md
#7
grbot
closed
5 years ago
0
Add genome-calling
#6
grbot
closed
5 years ago
0
genomics-db-import creating new and updating db is working
#5
grbot
closed
5 years ago
0
Fixed PAR and nonPAR regions for b37 and b38 builds
#4
grbot
closed
5 years ago
0
Update master with changes
#3
grbot
closed
5 years ago
0
Updating with changes from dev
#2
grbot
closed
5 years ago
0
Increased collate's required memory to 16GB
#1
grbot
closed
5 years ago
0