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greenelab / ADAGEpath

An R package (ADAGEpath) to perform signature analysis using methodology from the ADAGE manuscript
BSD 3-Clause "New" or "Revised" License
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Incorporating ArrayExpress #11

Closed tj8901nm closed 7 years ago

tj8901nm commented 7 years ago

This PR

  1. loads the experiment-sample mapping file into the package (data-raw/experimentIDs.R and R/data.R);
  2. adds functions to query the ArrayExpress database (query_ArrayExpress.R);
  3. modifies load_data.R to add the option to directly load datasets from ArrayExpress;
  4. fixes small problems in process_signature.R and test_activation.R