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greenelab / ADAGEpath

An R package (ADAGEpath) to perform signature analysis using methodology from the ADAGE manuscript
BSD 3-Clause "New" or "Revised" License
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Pathway annotation and bug fix #17

Closed tj8901nm closed 7 years ago

tj8901nm commented 7 years ago

This PR contains changes that

  1. incorporates curated pathways into gene annotation and gene-gene network
  2. refines marginal activation plot
  3. fixes several bugs
  4. updates R version dependency
tj8901nm commented 7 years ago

@gwaygenomics Thanks for reviewing this! I tweaked vignettes a little bit and pushed another commit. It should be quick to review. Sorry for the belated commit!