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greenelab / connectivity-search-analyses

hetnet connectivity search research notebooks (previously hetmech)
BSD 3-Clause "New" or "Revised" License
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Fix error when importing hetmech.matrix #145

Closed zietzm closed 5 years ago

zietzm commented 5 years ago

@gwaygenomics made the following observation:

Importing hetmech.matrix without previously importing hetmech.hetmat gives an ImportError

In the following image, I ran the first cell, then restarted the kernel and ran only the second cell. As can be seen below, importing hetmech.matrix alone or before hetmech.hetmat gives this error.

image

gwaybio commented 5 years ago

I am getting a different, but related error now when using hetmech in a conda environment with:

- pip:
  - git+https://github.com/greenelab/hetmech@b4aca774a2e9b41e6c448535d3b1cc2d9b3f85f4

The error is

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
<ipython-input-2-96e8d754da50> in <module>
----> 1 import hetmech.hetmat
      2 import hetmech.matrix

ModuleNotFoundError: No module named 'hetmech.hetmat'

It looks like the error is that conda cannot find the hetmat folder:

gway@camo:~/anaconda3/envs/interpret-compression/lib/python3.6/site-packages/hetmech$ ls
degree_group.py  degree_weight.py  diffusion.py  __init__.py  matrix.py  pipeline.py  __pycache__  xarray.py