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greenelab / core-accessory-interactome

Investigating the functional relationship between P. aeruginosa core and accessory genes.
BSD 3-Clause "New" or "Revised" License
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Try calculating correlations using only PAO1 samples and only PA14 samples #2

Closed ajlee21 closed 4 years ago

ajlee21 commented 4 years ago

These are correlations between genes in PAO1 and PA14 expression data combined, correct? Just want to make sure my understanding of what data you're using here is right.

If so, it might also be interesting to see what happens in the coexpression analysis if you use just PAO1 or just PA14 data (but still using both strains to determine core/accessory genes)...no need to try it now, just an idea for the future.

Originally posted by @jjc2718 in https://github.com/greenelab/core-accessory-interactome/pull/1

ajlee21 commented 4 years ago

Grouping samples can now be found in sra_experiment notebooks